Overview



Missingness - 1800 MIP Panel







## 
## Call:
## lm(formula = hotspot2$F_MISS ~ hotspot2$pfdens + hotspot2$platenum)
## 
## Residuals:
##      Min       1Q   Median       3Q      Max 
## -0.76159 -0.20166  0.03691  0.17336  0.77557 
## 
## Coefficients:
##                      Estimate Std. Error t value Pr(>|t|)    
## (Intercept)         9.517e-01  3.052e-02  31.178  < 2e-16 ***
## hotspot2$pfdens    -4.460e-06  6.939e-07  -6.427 2.86e-10 ***
## hotspot2$platenum4  2.345e-02  4.199e-02   0.558 0.576840    
## hotspot2$platenum5 -1.921e-01  4.212e-02  -4.561 6.31e-06 ***
## hotspot2$platenum6 -5.953e-01  4.216e-02 -14.120  < 2e-16 ***
## hotspot2$platenum7 -1.927e-01  4.202e-02  -4.587 5.59e-06 ***
## hotspot2$platenum8 -4.217e-01  4.198e-02 -10.045  < 2e-16 ***
## hotspot2$platenum9 -4.145e-01  1.193e-01  -3.474 0.000553 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 0.283 on 542 degrees of freedom
## Multiple R-squared:  0.4179, Adjusted R-squared:  0.4103 
## F-statistic: 55.58 on 7 and 542 DF,  p-value: < 2.2e-16
## 
## Call:
## lm(formula = uvinza$F_MISS ~ uvinza$pfdens + uvinza$platenum)
## 
## Residuals:
##      Min       1Q   Median       3Q      Max 
## -0.68137 -0.19558  0.04626  0.13924  0.73034 
## 
## Coefficients:
##                    Estimate Std. Error t value Pr(>|t|)    
## (Intercept)       9.459e-01  4.911e-02  19.260  < 2e-16 ***
## uvinza$pfdens    -5.566e-06  1.405e-06  -3.960 0.000134 ***
## uvinza$platenum5 -1.797e-01  6.221e-02  -2.889 0.004666 ** 
## uvinza$platenum6 -5.900e-01  6.650e-02  -8.872 1.69e-14 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 0.274 on 108 degrees of freedom
## Multiple R-squared:  0.4695, Adjusted R-squared:  0.4548 
## F-statistic: 31.86 on 3 and 108 DF,  p-value: 7.84e-15


Missingness - Drug Resistance MIP Panel



Show missingness by parasitemia


Show missingness by plate



## 
## Call:
## lm(formula = hotspot2$F_MISS ~ hotspot2$pfdens)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -0.4035 -0.3508 -0.1759  0.4356  0.9586 
## 
## Coefficients:
##                   Estimate Std. Error t value Pr(>|t|)    
## (Intercept)      4.080e-01  1.936e-02  21.081  < 2e-16 ***
## hotspot2$pfdens -4.315e-06  9.530e-07  -4.528 7.31e-06 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 0.3931 on 548 degrees of freedom
## Multiple R-squared:  0.03607,    Adjusted R-squared:  0.03431 
## F-statistic:  20.5 on 1 and 548 DF,  p-value: 7.309e-06
## 
## Call:
## lm(formula = hotspot2$F_MISS ~ hotspot2$pfdens + hotspot2$platenum)
## 
## Residuals:
##      Min       1Q   Median       3Q      Max 
## -0.67833 -0.23337 -0.07014  0.30740  0.89986 
## 
## Coefficients:
##                      Estimate Std. Error t value Pr(>|t|)    
## (Intercept)         2.622e-01  3.631e-02   7.219 1.77e-12 ***
## hotspot2$pfdens    -4.169e-06  8.255e-07  -5.050 6.06e-07 ***
## hotspot2$platenum4  4.267e-01  4.996e-02   8.542  < 2e-16 ***
## hotspot2$platenum5 -1.333e-01  5.011e-02  -2.661  0.00802 ** 
## hotspot2$platenum6  4.000e-01  5.015e-02   7.976 9.01e-15 ***
## hotspot2$platenum7  1.477e-01  4.999e-02   2.955  0.00327 ** 
## hotspot2$platenum8  3.719e-02  4.994e-02   0.745  0.45680    
## hotspot2$platenum9 -4.173e-02  1.419e-01  -0.294  0.76886    
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 0.3367 on 542 degrees of freedom
## Multiple R-squared:  0.3005, Adjusted R-squared:  0.2914 
## F-statistic: 33.26 on 7 and 542 DF,  p-value: < 2.2e-16


Overall


District Kept Total %
BUHIGWE 75 98 76.53061
CHATO 16 115 13.91304
ILEMELA 64 111 57.65766
KIBAHA 101 160 63.12500
KIGOMA-UJIJI 154 197 78.17259
KYELA 45 103 43.68932
MASASI 86 117 73.50427
MTWARA DC 12 23 52.17391
NANYUMBU 22 39 56.41026
NYANGHWALE 4 32 12.50000
NYASA 26 43 60.46512
TUNDURU 67 89 75.28090
UVINZA 67 113 59.29204


District Kept Total %
BUHIGWE 76 98 77.55102
CHATO 93 115 80.86957
ILEMELA 90 111 81.08108
KIBAHA 130 160 81.25000
KIGOMA-UJIJI 170 197 86.29442
KYELA 26 103 25.24272
MASASI 94 117 80.34188
MTWARA DC 15 23 65.21739
NANYUMBU 32 39 82.05128
NYANGHWALE 16 32 50.00000
NYASA 40 43 93.02326
TUNDURU 79 89 88.76404
UVINZA 82 113 72.56637